PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G070800.1
Common NameB456_004G070800, LOC105790624
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 235aa    MW: 26306.2 Da    PI: 4.8696
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G070800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.4e-19100150356
                 AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                         y+GVr+++ +g ++AeIrdp+ ng  +r++lg++ t+e+Aa a+++a+ +++g+
  Gorai.004G070800.1 100 YRGVRRRP-WGTYAAEIRDPKRNG--ARIWLGTYETPEGAALAYDRAAFNMRGA 150
                         9*******.**********98776..*************************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.108.5E-3199158IPR001471AP2/ERF domain
PfamPF008475.3E-1399149IPR001471AP2/ERF domain
CDDcd000186.40E-3099159No hitNo description
PROSITE profilePS5103223.20999157IPR001471AP2/ERF domain
SMARTSM003803.6E-3499163IPR001471AP2/ERF domain
PRINTSPR003672.6E-12100111IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-21100158IPR016177DNA-binding domain
PRINTSPR003672.6E-12139159IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MYCDSASDFD LSLLDSIRQY LLEDDCDTIP GQVVENLPKT ELHEDAINVD QWINFDQSFD  60
AAEETVAVNN ASFPSFEVNF QMETTAAVPK SHAPPKEVNY RGVRRRPWGT YAAEIRDPKR  120
NGARIWLGTY ETPEGAALAY DRAAFNMRGA KAKLNFPHLI GSNQVEPVRV SSNKRRSPKP  180
SSSCSSAQSP SSTWDDGTPK SKQMRSEKYS SVKTEFEVDM YQLIPTEFCQ TINC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-2896164270ATERF1
3gcc_A1e-2896164270ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5864366e-56JX586436.1 Gossypium hirsutum clone NBRI_GE20263 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012473782.11e-177PREDICTED: ethylene-responsive transcription factor 2-like
TrEMBLA0A0D2QT871e-177A0A0D2QT87_G
STRINGscaffold_403422.16e-43(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.11e-41ethylene-responsive element binding factor 13
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]